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polyadenylate-binding protein 2; poly(A)-binding protein 2; polyadenylate-binding nuclear protein 1; nuclear poly(A)-binding protein 1 (PABPN1, PAB2, PABP2)
Function:
- role in the 3'-end formation of mRNA precursors (pre-mRNA) by the addition of a poly(A) tail of 200-250 nucleotides to the upstream cleavage product
- stimulates poly(A) polymerase (PAPOLA) conferring processivity on the poly(A) tail elongation reaction & controls also the poly(A) tail length
- increases the affinity of poly(A) polymerase for RNA
- also present at various stages of mRNA metabolism including nucleocytoplasmic trafficking & nonsense-mediated mRNA decay
- cooperates with SKIP to synergistically activate E-box- mediated transcription through MYOD1 & may regulate expression of muscle-specific genes
- binds to poly(A) & to poly(G) with high affinity
- may protect the poly(A) tail from degradation (putative)
- Arg dimethylation is asymmetric & involves PRMT1 & PRMT3; it does not influence the RNA binding properties
- binds RNA as a monomer & oligomerizes when bound to poly(A)
- interacts with PAPOLA, but only in presence of oligo(A) RNA
- interacts with transportin
- association in a ternary complex with CPSF4 & influenza A virus NS1 blocks pre-mRNAs processing, thereby preventing nuclear export of host cell mRNAs
- associates in a single complex with SKIP & MYOD1 & interacts with SKIP in differentiated myocytes.
- interacts with NUDT21/CPSF5
Structure:
- monomer & homooligomer
- the RRM domain is essential for specific adenine bases recognition in the poly(A) tail but not sufficient for poly(A) binding (putative)
- contains 1 RRM domain (RNA recognition motif)
Compartment:
- nucleus (putative)
- cytoplasm
- shuttles between the nucleus & the cytoplasm but predominantly found in the nucleus
- its nuclear import may involve the nucleocytoplasmic transport receptor transportin & a RAN-GTP-sensitive import mechanism
- exported to the cytoplasm by a carrier-mediated pathway that is independent of mRNA traffic
- nucleus; nuclear speckle
- colocalizes with SKIP & poly(A) RNA in nuclear speckles (putative)
Alternative splicing: named isoforms=2; may be due to a competing donor splice site
Expression: ubiquitous
Pathology:
- defects in PABPN1 are the cause of oculopharyngeal muscular dystrophy
- see oculopharyngeal muscular dystrophy for discussion on molecular pathology of the disease
Polymorphism:
- the poly-Ala region of PABPN1 is polymorphic (6-7 repeats) in the population & is expanded to 8-13 repeats in patients with oculopharyngeal muscular dystrophy
- compound heterozygotes for (GCG)9 mutation & a (GCG)7 allele result in earlier onset & more severe clinical manifestations of the disease
General
phosphoprotein
polyadenylate binding protein
Properties
SIZE: entity length = 306 aa
MW = 33 kD
COMPARTMENT: cytoplasm
cell nucleus
MOTIF: SKIP interaction {2-145}
MOTIF: alanine-rich region {2-14}
MOTIF: alanine residue (SEVERAL)
acetylation site
SITE: N-TERMINUS
EFFECTOR-BOUND: acetyl
Ser phosphorylation site {S52}
Ser phosphorylation site {S95}
coiled coil {115-151}
MOTIF: Stimulates PAPOLA {119-147}
Ser phosphorylation site {S150}
Necessary for homooligomerization {155-306}
MOTIF: RNP motif
NAME: RNP motif
SITE: 172-249
FOR-BINDING-OF: ribonucleic acid
MOTIF: ribonucleoprotein-1 motif
NAME: ribonucleoprotein-1 motif
FOR-BINDING-OF: ribonucleic acid
MOTIF: ribonucleoprotein-1 motif
ribonucleoprotein-2 motif
ribonucleoprotein-2 motif
FOR-BINDING-OF: ribonucleic acid
MOTIF: ribonucleoprotein-1 motif
ribonucleoprotein-2 motif
PAPOLA interaction {286-306}
Database Correlations
OMIM correlations
MORBIDMAP 602279
UniProt Q86U42
Pfam PF00076
Entrez Gene 8106
Kegg hsa:8106
References
- UniProt :accession Q86U42
- GeneReviews
https://www.genecards.org/cgi-bin/carddisp.pl?gene=PABPN1
Component-of
mRNP granule complex