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aryl hydrocarbon receptor nuclear translocator-like protein 2 (brain & muscle ARNT-like 2, member of PAS protein 9, basic-helix-loop-helix-PAS protein MOP9, CYCLE-like factor, CLIF, ARNTL2, BMAL2, CLIF, MOP9)
Function:
- interacts directly with CLOCK to form BMAL2-CLOCK transactivator
- BMAL2-CLOCK heterodimers activate E-box element (3'- CACGTG-5') transcription
- in umbilical vein endothelial cells, activates SERPINE1 through E-box sites, this transactivation is inhibited by PER2 & CRY1.
- component of the circadian core oscillator
- iinteracts with NPAS2, HIF1A
Structure:
- contains 1 basic helix-loop-helix domain (bHLH)
- contains 1 PAC domain (PAS-associated C-terminal)
- contains 2 PAS domains (PER-ARNT-SIM) Commpartment: nucleus
Alternative splicing: named isoforms=8
Expression:
- expressed in fetal brain
- expressed in brain & placenta
- lower levels in heart, liver, thymus, kidney, lung
- expressed in endothelial cells & neuronal cells of the suprachiasmatic nucleus
- detected in endothelial cells of the heart, lung & kidney
- in the brain, specifically expressed in the thalamus, hippocampus & amygdala
- constitutively expressed
- no circadian rhythm expression pattern
General
DNA-binding protein
Properties
SIZE: MW = 71 kD
entity length = 636 aa
COMPARTMENT: cell nucleus
MOTIF: DNA-binding motif
SITE: 108-120
helix-loop-helix
NAME: helix-loop-helix
SITE: 121-161
FOR-BINDING-VIA: helix-loop-helix
PAS domain {178-250}
PAS domain {357-427}
PAC domain {432-475}
Database Correlations
UniProt Q8WYA1
PFAM correlations
References
UniProt :accession Q8WYA1